STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydaAUniversal stress protein family; Identified by sequencesimilarity; putative InterPro: Universal stress protein (Usp); Specificity unclear. (305 aa)    
Predicted Functional Partners:
anr
Transcriptional regulator Anr; Identified by sequencesimilarity; putative InterPro: Cyclic nucleotide-binding domain; Specificity unclear.
  
  
 0.880
ABO_1339
Conserved hypothetical protein.
       0.725
hemF
Coproporphyrinogen oxidase; Identified by match to TIGR protein family HMMTIGR00538 InterPro: Oxygen-independent coproporphyrinogen III oxidase HemN; High confidence in function and specificity; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.696
ABO_1346
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.643
ABO_1937
Metal ion transporter; Identified by sequencesimilarity; putative InterPro: CBS domain; Function unclear.
      
 0.598
ABO_1345
Cation-transporting P-type ATPase identified by sequence similarity; putative InterPro: E1-E2 ATPases; Hypothetical protein.
     
 0.580
ccoS
InterPro: Cytochrome oxidase maturation protein cbb3-type; Function unclear.
  
    0.576
ABO_1343
Conserved hypothetical protein.
       0.570
ABO_1440
Conserved hypothetical protein.
  
     0.539
ABO_0278
Identified by match to PFAM protein family HMMPF00702 InterPro: Haloacid dehalogenase/epoxide hydrolase family; Family membership.
  
     0.524
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.