STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
adhBAlcohol dehydrogenase; Identified by sequencesimilarity; putative InterPro: Zinc-containing alcohol dehydrogenase superfamily; Family membership. (333 aa)    
Predicted Functional Partners:
fabF
3-oxoacyl-[acyl-carrier-protein] synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  
 0.899
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by sequencesimilarity; putative InterPro: Acyl transferase domain; High confidence in function and specificity.
 
    
 0.897
ABO_1353
Transcriptional regulator, LysR family; Identified by sequencesimilarity; putative InterPro: Bacterial regulatory protein LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
 
     0.732
ABO_0955
Oxidoreductase identified by match to PFAM protein family HMMPF01575 InterPro: MaoC-like dehydratase domain; Family membership.
 
 
 0.680
ABO_0817
(alcohol dehydrogenase zinc-containing) identified by sequencesimilarity; putative; Family membership.
    
0.634
ABO_1482
MaoC domain protein, putative; Identified by match to PFAM protein family HMMPF01575 InterPro: MaoC-like dehydratase domain; Family membership.
 
 
 0.586
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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