STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
copB(copper resistance protein B); conserved hypothetical protein. (249 aa)    
Predicted Functional Partners:
copA
(copper resistance protein CopA family) identified by sequencesimilarity; putative InterPro: Multicopper oxidase type 1; High confidence in function and specificity.
  
 0.982
pcoA
(copper resistance protein A) identified by sequencesimilarity; putative InterPro: Multicopper oxidase type 1; High confidence in function and specificity.
  
 0.924
copC
Copper-binding protein plastocyanin/azurin family identified by match to PFAM protein family HMMPF00127; Specificity unclear.
 
  
 0.906
ABO_1361
Amino acid transporter, putative; Identified by match to TIGRFAM protein family HMMTIGR00911; putative InterPro: Amino acid permease; Family membership.
 
     0.746
ABO_1360
Copper/heavy metal-translocating P-type ATPase) identified by sequencesimilarity; putative InterPro: Haloacid dehalogenase/epoxide hydrolase family; High confidence in function and specificity.
 
   
 0.582
phoQ
PhoQ protein; Identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Family membership.
 
   
 0.503
ABO_0137
(conserved hypothetical protein, Kef-type K+ transport systems, predicted NAD-binding component) identified by sequencesimilarity; putative InterPro: Potassium channel; Family membership.
 
     0.457
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.