STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
czcD1Cation efflux family protein; (cobalt/cadmium/zinc transporter CDF family),identified by sequencesimilarity; putative InterPro: Cation efflux family; Family membership. (307 aa)    
Predicted Functional Partners:
ABO_1373
Conserved hypothetical protein; InterPro: Uncharacterized protein family UPF0060 Uncharacterized BCR, YnfA/UPF0060 family This entry describes integral membrane proteins of unknown function.
       0.761
ABO_1375
Conserved hypothetical protein.
       0.586
ABO_0245
Cobalt/cadmium/zinc transporter CDF family, identified by sequencesimilarity; putative InterPro: Cation efflux family; Family membership.
 
     0.548
czcD
(Cation efflux system protein) identified by sequencesimilarity; putative InterPro: Cation efflux family; Family membership.
  
   
0.465
copA-2
Copper-transporting P-type ATPase (EC 3.6.3.4); High confidence in function and specificity.
 
  
 0.454
czcC1
Cobalt/zinc/cadmium efflux RND transporter outermembrane protein (CzcC family) identified by sequencesimilarity; putative InterPro: Outer membrane efflux protein; Family membership.
 
  
 0.436
ABO_1172
Identified by match to TIGR protein family HMMTIGR01297 InterPro: Cation efflux family; Family membership; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
  
 
 0.408
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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