STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ABO_1388Putative transcriptional regulator; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. (319 aa)    
Predicted Functional Partners:
ABO_1389
Conserved hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
 
 
 0.999
ABO_1387
S4 domain protein; Identified by match to PFAM protein family HMMPF01479 InterPro: conserved hypothetical protein 93; Belongs to the pseudouridine synthase RsuA family.
 
  
 0.907
trpS
Tryptophanyl-tRNA synthetase, putative; Identified by match to PFAM protein family HMMPF00579 InterPro: t-RNA synthetase class Ib; High confidence in function and specificity; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.824
smc
Chromosome segregation SMC protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 
 0.800
cmk
Cytidylate kinase; Identified by sequence similarity; putative InterPro: Cytidylate kinase; High confidence in function and specificity.
 
  
 0.734
topA
Type I DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA [...]
  
  
 0.706
ABO_1824
GTPase family protein; Family membership.
 
    0.542
ABO_1391
Sua5/YciO/YrdC/YwlC family protein) identified by match to TIGR protein family HMMTIGR00057 InterPro: Sua5/YciO/YrdC/YwlC protein family; Family membership; Belongs to the SUA5 family.
       0.535
parB
Identified by match to PFAM protein family HMMPF02195 InterPro: ParB-like partition protein; High confidence in function and specificity; Belongs to the ParB family.
  
   
 0.457
ABO_1392
(Polymerase and Histidinol Phosphatase, PHP domain N-terminal region:PHP domain C-terminal region, putative) identified by match to PFAM protein family HMMPF02231; Family membership.
       0.435
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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