Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1391Sua5/YciO/YrdC/YwlC family protein) identified by match to TIGR protein family HMMTIGR00057 InterPro: Sua5/YciO/YrdC/YwlC protein family; Family membership; Belongs to the SUA5 family. (207 aa)    
Predicted Functional Partners:
ABO_1392
(Polymerase and Histidinol Phosphatase, PHP domain N-terminal region:PHP domain C-terminal region, putative) identified by match to PFAM protein family HMMPF02231; Family membership.
 
    0.881
ABO_1387
S4 domain protein; Identified by match to PFAM protein family HMMPF01479 InterPro: conserved hypothetical protein 93; Belongs to the pseudouridine synthase RsuA family.
 
  
 0.834
gcp
Glycoprotease family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 0.645
ABO_1128
Conserved hypothetical protein; Identified by sequence similarity; putative InterPro: Glycoprotease (M22) metallo-protease family.
    
 0.618
ABO_2207
(conserved hypothetical protein TIGR00150) identified by match to TIGR protein family HMMTIGR00150 InterPro: Uncharacterised P-loop hydrolase UPF0079.
    
 0.576
ABO_1389
Conserved hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
       0.536
ABO_1388
Putative transcriptional regulator; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
       0.535
trpS
Tryptophanyl-tRNA synthetase, putative; Identified by match to PFAM protein family HMMPF00579 InterPro: t-RNA synthetase class Ib; High confidence in function and specificity; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.485
yciI
YCII-related domain protein; Identified by match to PFAM protein family HMMPF03795 The majority of proteins in this group contain a single copy of this domain, though it is also found as a repeat (Q9AJZ7). A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function; Family membership.
       0.471
ispZ
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.466
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.