STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1392(Polymerase and Histidinol Phosphatase, PHP domain N-terminal region:PHP domain C-terminal region, putative) identified by match to PFAM protein family HMMPF02231; Family membership. (278 aa)    
Predicted Functional Partners:
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
    
 0.903
ABO_1391
Sua5/YciO/YrdC/YwlC family protein) identified by match to TIGR protein family HMMTIGR00057 InterPro: Sua5/YciO/YrdC/YwlC protein family; Family membership; Belongs to the SUA5 family.
 
    0.881
ABO_1387
S4 domain protein; Identified by match to PFAM protein family HMMPF01479 InterPro: conserved hypothetical protein 93; Belongs to the pseudouridine synthase RsuA family.
      0.740
yciI
YCII-related domain protein; Identified by match to PFAM protein family HMMPF03795 The majority of proteins in this group contain a single copy of this domain, though it is also found as a repeat (Q9AJZ7). A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function; Family membership.
  
    0.619
ispZ
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.603
trpS
Tryptophanyl-tRNA synthetase, putative; Identified by match to PFAM protein family HMMPF00579 InterPro: t-RNA synthetase class Ib; High confidence in function and specificity; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.532
ABO_1395
(conserved hypothetical protein; SH3 domain protein) identified by sequencesimilarity.
       0.453
ABO_1388
Putative transcriptional regulator; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
       0.435
ABO_1389
Conserved hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
       0.435
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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