STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yciIYCII-related domain protein; Identified by match to PFAM protein family HMMPF03795 The majority of proteins in this group contain a single copy of this domain, though it is also found as a repeat (Q9AJZ7). A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function; Family membership. (99 aa)    
Predicted Functional Partners:
ispZ
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
  
    0.817
ABO_2688
(long-chain acyl-CoA thioester hydrolase family protein, putative) identified by match to PFAM protein family HMMPF01662 InterPro: long-chain acyl-CoA thioester hydrolase; High confidence in function and specificity.
      0.720
ABO_1392
(Polymerase and Histidinol Phosphatase, PHP domain N-terminal region:PHP domain C-terminal region, putative) identified by match to PFAM protein family HMMPF02231; Family membership.
  
    0.619
ABO_1395
(conserved hypothetical protein; SH3 domain protein) identified by sequencesimilarity.
  
    0.598
ABO_1391
Sua5/YciO/YrdC/YwlC family protein) identified by match to TIGR protein family HMMTIGR00057 InterPro: Sua5/YciO/YrdC/YwlC protein family; Family membership; Belongs to the SUA5 family.
       0.471
hflD
Conserved hypothetical protein; Identified by sequence similarity.
  
    0.431
bioH
Biotin biosynthesis protein bioH; The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters.
  
    0.428
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.