STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1395(conserved hypothetical protein; SH3 domain protein) identified by sequencesimilarity. (220 aa)    
Predicted Functional Partners:
yciI
YCII-related domain protein; Identified by match to PFAM protein family HMMPF03795 The majority of proteins in this group contain a single copy of this domain, though it is also found as a repeat (Q9AJZ7). A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function; Family membership.
  
    0.559
ABO_2145
(conserved hypothetical protein) identified by sequence similarity; putative InterPro: TPR repeat.
 
     0.530
ispZ
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.504
ABO_1221
Membrane-bound lytic murein transglycosylase D; Identified by match to PFAM protein family HMMPF01464 InterPro: SLT domain; High confidence in function and specificity.
 
   
 0.487
ABO_0432
Conserved hypothetical protein.
  
     0.465
ABO_1260
Conserved hypothetical protein.
  
    0.435
gspM
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
   
 0.430
ABO_1229
Hypothetical protein predicted by Glimmer/Critica.
  
     0.429
ABO_0764
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.418
ABO_1535
(transport protein, putative) identified by sequencesimilarity; putative InterPro: HMGCR/Patched 5TM box; Family membership.
 
     0.405
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.