STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1407Sugar kinase, putative; (sugar kinase) identified by sequence similarity; putative InterPro: Carbohydrate kinase FGGY family; Family membership. (520 aa)    
Predicted Functional Partners:
glpD
Glycerol-3-phosphate dehydrogenase; Identified by match to PFAM protein family HMMPF01266 InterPro: D-amino acid oxidase; High confidence in function and specificity.
 
  
 0.969
ABO_1409
Alkylglycerone-phosphate synthase; InterPro: FAD linked oxidase C-terminal; Function unclear.
 
   
 0.951
rpe
Ribulose-phosphate 3-epimerase; Identified by match to TIGR protein family HMMTIGR01740 InterPro: Ribulose-phosphate 3-epimerase; High confidence in function and specificity.
 
  
 
 0.684
ABO_1405
Transcriptional regulator, MerR family; Identified by match to PFAM protein family HMMPF00376 InterPro: Bacterial regulatory proteins MerR family; Family membership.
       0.672
ABO_1406
Hypothetical protein.
       0.607
mtnB
Sugar aldolase, putative; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Belongs to the aldolase class II family. MtnB subfamily.
  
  
 0.563
talB
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 1 subfamily.
  
 
 0.518
ABO_1410
Acyltransferase, putative; (Acyltransferase family protein) identified by sequencesimilarity; putative InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); Family membership.
       0.480
ABO_1042
Identified by match to PFAM protein family HMMPF03009 InterPro: Glycerophosphoryl diester phosphodiesterase; conserved hypothetical protein.
  
   
 0.424
ABO_1601
Aldolase, putative; Deleted EC_number 4.1.2.1; (aldolase, putative) identified by match to TIGR protein family HMMTIGR01086, putative InterPro: Class II Aldolase and Adducin N-terminal domain; Family membership.
  
  
 0.419
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.