STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1411OmpA family protein; Identified by match to PFAM protein family HMMPF00691 InterPro: Bacterial outer membrane protein; Family membership. (221 aa)    
Predicted Functional Partners:
tolB
tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.599
ABO_1410
Acyltransferase, putative; (Acyltransferase family protein) identified by sequencesimilarity; putative InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); Family membership.
       0.525
lolA
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
 
 0.479
ABO_0520
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
   
 
 0.470
ada
methylated-DNA-[protein]-cysteine S-methyltransferase; (adaptive response regulator protein) identified by match to PFAM protein family HMMPF01035 InterPro: Methylated-DNA--protein-cysteine methyltransferase AraC type helix-turn-helix; High confidence in function and specificity.
       0.444
ompH
(outer membrane protein OmpH) identified by match to PFAM protein family HMMPF03938; Function unclear; Belongs to the skp family.
  
 
 0.441
ABO_2041
Identified by match to PFAM protein family HMMPF00877 InterPro: NLP/P60; Function unclear.
 
 
 0.438
ABO_1413
Hypothetical protein predicted by Glimmer/Critica.
       0.436
cpoB
Conserved hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.425
ABO_2195
Hypothetical protein; (multidrug efflux RND transporter putative) identified by match to TIGR protein family HMMTIGR00915.
  
 
 0.405
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.