STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cysBTranscriptional regulator for cysteine regulon; (transcriptional regulator CysB) identified by sequence similarity;putative InterPro: Bacterial regulatory protein LysR family; High confidence in function and specificity. (325 aa)    
Predicted Functional Partners:
algN
Negative regulator for alginate biosynthesis; (sigma factor algU regulatory protein AlgN) identified by match to PFAM protein family HMMPF03888; High confidence in function and specificity.
  
     0.614
ABO_0028
Transcriptional regulator LysR family identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; High confidence in function and specificity.
  
     0.531
ABO_1438
5'-nucleotidase; 5-nucleotidase putative identified by sequencesimilarity; putative; conserved hypothetical protein.
       0.523
hemX
uroporphyrin-III C-methyltransferase, putative; Identified by sequence similarity; putative; Hypothetical protein.
  
     0.466
ABO_1436
Conserved hypothetical protein.
       0.461
ABO_0118
Transcriptional regulator LysR family identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; Family membership.
  
     0.429
omlA
Outer membrane lipoprotein OmlA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.406
ABO_1099
Transcriptional regulator, LysR family; Identified by sequencesimilarity; putative InterPro: Bacterial regulatory protein LysR family; Specificity unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.400
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.