STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1451Transglutaminase-like superfamily domain protein; Identified by match to PFAM protein family HMMPF01841; Family membership. (678 aa)    
Predicted Functional Partners:
ABO_1452
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF01882 InterPro: Protein of unknown function DUF58.
  
 0.990
ABO_1453
(ATPase, AAA protein family, putative) identified by match to PFAM protein family HMMPF00004; Family membership.
 
   
 0.941
ABO_0132
LysM domain protein; Region start changed from 142733 to 142994 (-261 bases).
  
     0.744
pilN-2
Type IV pili biogenesis protein PilN.
  
     0.708
pilP
Type 4 fimbrial biogenesis protein PilP.
  
     0.705
pilO
Type 4 fimbrial biogenesis protein pilO.
  
     0.702
pilM
Type IV fimbrial biogenesis protein PilM.
 
     0.696
pilZ
Type IV pilus biogenesis protein, identified by sequence similarity to Pseudomonas syringae pv. tomato str. DC3000; High confidence in function and specificity.
 
     0.690
pilN
(putative pilus biogenesis protein); Family membership.
 
     0.660
ABO_0464
Conserved hypothetical protein.
  
     0.648
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.