STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1484Conserved hypothetical protein; Identified by match to TIGR protein family HMMTIGR01738; Family membership. (283 aa)    
Predicted Functional Partners:
ABO_1483
Hydrolase (acting on ester bonds) identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership.
 
   
 0.860
ABO_1482
MaoC domain protein, putative; Identified by match to PFAM protein family HMMPF01575 InterPro: MaoC-like dehydratase domain; Family membership.
  
 
  0.583
xthA
(xth), (Exonuclease III),(EXO III),(APendonuclease VI). identified by sequencesimilarity; putative InterPro: AP endonucleases family 1 Exodeoxyribonuclease III xth; High confidence in function and specificity.
       0.541
ABO_1486
Hypothetical protein.
       0.532
ech1
(enoyl-CoA hydratase/isomerase family protein, putative) identified by match to PFAM protein family HMMPF00378 InterPro: Enoyl-CoA hydratase/isomerase; High confidence in function and specificity.
  
 
 0.522
fabB-3
Identified by match to PFAM protein family HMMPF00109 InterPro: Chalcone synthase (CHS); High confidence in function and specificity.
 
   
 0.504
ABO_2314
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF01124.
  
     0.432
ABO_0970
D-amino acid oxidase family protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.
  
 
  0.429
ABO_2102
acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMMPF00441 InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity.
  
 
  0.404
phaD
phaD, transcriptional regulator TetR family InterPro: Bacterial regulatory proteins TetR family; High confidence in function and specificity.
  
     0.402
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.