Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1504(conserved hypothetical protein,; Family membership. (351 aa)    
Predicted Functional Partners:
ABO_1505
Hypothetical protein; Identified by sequence similarity.
       0.549
ABO_1506
Hypothetical protein.
       0.549
ABO_1876
SIR2 family protein; NAD-dependent protein deacetylases, SIR2 family; SIR2-like transcriptional silencer protein identified by match to PFAM protein family HMMPF02146; Family membership.
 
     0.486
ABO_1729
Conserved hypothetical protein; (potassium efflux system protein KefA putative) identified by sequence similarity; putative InterPro: Uncharacterized protein family UPF0003 shows 36 38dentity to the (aefA) (potassium efflux system protein KefA, putative)in Pseudomonas putida KT2440 (PP5067).
  
    0.464
ABO_1700
Esterified fatty acid cis/trans isomerase family protein identified by sequence similarity; putative; Family membership.
  
     0.460
algJ
Alginate O-acetylation protein AlgJ; High confidence in function and specificity.
  
     0.447
alg8
Alginate biosynthesis protein Alg8; Function unclear.
 
     0.407
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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