STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fhuAFerrichrome-iron receptor precursor (Ferric hydroxamate uptake) (Ferric hydroxamate receptor)., TonB-dependent siderophore receptor, TonB-dependent Receptor Plug Domain, TonB-siderophor: TonB-dependent siderophore receptor; High confidence in function and specificity. (729 aa)    
Predicted Functional Partners:
ABO_1508
(membrane protein putative) identified by sequence similarity; Family membership.
 
  
 0.923
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
 
  
 0.752
ABO_2092
(peptide synthetase, putative); identified by sequence similarity; putative; High confidence in function and specificity.
 
  
 0.706
ABO_0628
InterPro: TonB-dependent receptor protein; Family membership.
 
  
 0.695
ABO_1688
TonB-dependent siderophore receptor; Function unclear.
  
  
 0.674
ABO_1104
Outer membrane siderophore receptor putative identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; Function unclear.
  
  
 0.656
ABO_2371
TonB-dependent receptor protein; Identified by match to PFAM protein family HMMPF00593 InterPro: TonB-dependent receptor protein; Family membership.
  
   
 0.626
ABO_2138
TonB-dependent receptor; Identified by match to PFAM protein family HMMPF00593; Specificity unclear.
  
  
 0.533
ABO_1505
Hypothetical protein; Identified by sequence similarity.
       0.526
ABO_1506
Hypothetical protein.
       0.526
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.