STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1516vacJ lipoprotein, putative; (vacJ) (vacJ lipoprotein) VacJis attached to the outer membrane by a lipid anchor (by similarity); Function unclear. (275 aa)    
Predicted Functional Partners:
ABO_0558
Toluene-tolerance protein; (ttg2D) identified by sequence similarity; This family is a transporter which shows similarity to ABC transporters; Family membership.
 
 
 
 0.897
ABO_1621
Outer membrane porin, putative; High confidence in function and specificity.
   
 
 0.754
ABO_2163
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.754
ccmD
Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
     
 0.683
ABO_1517
Conserved hypothetical protein.
       0.591
ABO_1518
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0276 family.
       0.591
fabB-3
Identified by match to PFAM protein family HMMPF00109 InterPro: Chalcone synthase (CHS); High confidence in function and specificity.
     
 0.546
ABO_1519
Hypothetical protein.
       0.517
ABO_2153
Conserved hypothetical protein.
   
 
 0.449
mrdA
Penicillin-binding protein 2, putative; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
     0.417
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.