STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1518Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0276 family. (299 aa)    
Predicted Functional Partners:
ABO_1517
Conserved hypothetical protein.
 
  
 0.993
ABO_1519
Hypothetical protein.
 
  
 0.963
ABO_0818
Conserved hypothetical protein.
  
  
 0.616
ABO_1516
vacJ lipoprotein, putative; (vacJ) (vacJ lipoprotein) VacJis attached to the outer membrane by a lipid anchor (by similarity); Function unclear.
       0.563
fabB-3
Identified by match to PFAM protein family HMMPF00109 InterPro: Chalcone synthase (CHS); High confidence in function and specificity.
       0.470
algL
Alginate lyase, Poly(beta-D-mannuronate lyase)(Poly(mana) alginate lyase, precursor; Family membership.
   
    0.406
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.