STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1526Conserved hypothetical protein. (502 aa)    
Predicted Functional Partners:
ABO_1527
OmpA family protein; InterPro: Bacterial outer membrane protein; Family membership.
 
 
 
 0.823
ABO_2083
Conserved hypothetical protein that shows an Ankyrin-repeat InterPro: Ankyrin-repeat.
  
   
 0.677
ftsK
Cell division protein FtsK; Identified by sequence similarity; putative InterPro: FtsK/SpoIIIE family This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli FTSK_ECOLI and the stage III sporulation protein E SpoIIIE; Family membership.
    
 
 0.509
ABO_1079
InterPro: Serine proteases trypsin family; Family membership.
  
     0.489
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
 
     0.483
pfeA
Outer membrane ferric enterobactin receptor; Identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; High confidence in function and specificity.
  
 
 
 0.477
ABO_0678
InterPro: Serine proteases trypsin family; Family membership.
  
     0.449
ABO_0997
Conserved hypothetical protein.
  
  
 0.437
ABO_2373
Hypothetical protein.
  
     0.423
ABO_0628
InterPro: TonB-dependent receptor protein; Family membership.
    
 
 0.410
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.