Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1535(transport protein, putative) identified by sequencesimilarity; putative InterPro: HMGCR/Patched 5TM box; Family membership. (886 aa)    
Predicted Functional Partners:
ABO_1014
Conserved hypothetical protein.
 
   
 0.676
ABO_1534
Hypothetical protein.
       0.641
ABO_0667
(BNR domain protein) identified by match to PFAM protein family HMMPF02012 InterPro: BNR repeat BNR repaets are short repeats that were found in glycosyl hydrolases as well as other extracellular proteins of unknown function; Function unclear.
 
  
 0.475
ABO_1015
Conserved hypothetical protein.
 
     0.475
ABO_2491
Hypothetical protein.
  
     0.461
ABO_1536
Hypothetical protein.
   
   0.448
ABO_1532
(conserved hypothetical protein) identified by sequencesimilarity; putative.
 
     0.434
ABO_1395
(conserved hypothetical protein; SH3 domain protein) identified by sequencesimilarity.
 
     0.406
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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