STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
acyPHydrolase (acting on acid anhydrides in phosphorus-containing anhydrides) by match to PFAM protein family HMMPF03475 InterPro: Acylphosphatase; Family membership. (92 aa)    
Predicted Functional Partners:
aldh1
Identified by match to TIGR protein family HMMTIGR01722 InterPro: Aldehyde dehydrogenase family; Specificity unclear.
    
 0.902
alkH
(aldehyde dehydrogenase family protein) identified by match to TIGR protein family HMMTIGR01722 InterPro: Aldehyde dehydrogenase family; High confidence in function and specificity.
    
 0.902
amiC
Amidase family protein identified by sequencesimilarity; putative InterPro: Amidase; Specificity unclear; Belongs to the amidase family.
    
  0.901
acsA
acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.901
ABO_2482
Amidase; Family membership; Belongs to the amidase family.
    
  0.901
aimE
Aliphatic amidase; Catalyzes the hydrolysis of short-chain aliphatic amides to their corresponding organic acids with release of ammonia.
     
  0.900
rbn-1
(ribonuclease BN putative) identified by match to PFAM protein family HMMPF03631; paralog of Abo_259 InterPro: Putative Ribonuclease BN; Family membership.
 
     0.866
ABO_1541
Hydrolase alpha/beta fold family identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership.
       0.838
arsC
Arsenate reductase; Identified by sequence similarity; putative; Family membership.
       0.629
wrbA
Trp repressor binding protein; Identified by sequence similarity; putative InterPro: Flavodoxin; Family membership; Belongs to the WrbA family.
       0.629
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.