STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1551(ATPase, AAA protein family, putative) identified by match to PFAM protein family HMMPF00004 InterPro: AAA ATPase superfamily; Family membership. (323 aa)    
Predicted Functional Partners:
ABO_1552
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF01882 InterPro: Protein of unknown function DUF58.
  
 0.962
ABO_1548
Conserved hypothetical protein.
 
    0.814
ABO_1547
Conserved hypothetical protein.
 
    0.803
ABO_1550
Conserved hypothetical protein.
 
    0.761
ABO_1549
Conserved hypothetical protein.
 
    0.758
arsC
Arsenate reductase; Identified by sequence similarity; putative; Family membership.
     
 0.704
wrbA
Trp repressor binding protein; Identified by sequence similarity; putative InterPro: Flavodoxin; Family membership; Belongs to the WrbA family.
       0.704
ABO_1546
Hypothetical protein.
       0.704
ABO_1451
Transglutaminase-like superfamily domain protein; Identified by match to PFAM protein family HMMPF01841; Family membership.
 
   
 0.596
rbn-1
(ribonuclease BN putative) identified by match to PFAM protein family HMMPF03631; paralog of Abo_259 InterPro: Putative Ribonuclease BN; Family membership.
       0.520
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.