STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1553Conserved hypothetical protein; Function unclear. (196 aa)    
Predicted Functional Partners:
ABO_1554
(MATE efflux family protein, putative) identified by match to PFAM protein family HMMPF01554 InterPro: Uncharacterized domain UPF0013; Family membership.
       0.621
ABO_2445
Conserved hypothetical protein.
  
   
 0.546
efp
Translation elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.
  
   
 0.533
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
  
     0.530
ABO_1396
Hypothetical protein.
  
     0.513
ABO_1269
Putative methyltransferase; Identified by match to PFAM protein family HMMPF02390 InterPro: SAM (and some other nucleotide) binding motif; Hypothetical protein.
  
     0.512
ABO_1803
(conserved hypothetical protein TIGR01033) identified by match to TIGR protein family HMMTIGR01033 InterPro: Domain of unknown function DUF28.
  
     0.435
nfuA
yhgI conserved hypothetical protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
     0.430
lysRS
lysyl-tRNA synthetase; Identified by sequencesimilarity; putative InterPro: tRNA synthetases class II (D K and N); High confidence in function and specificity.
  
   
 0.422
miaE
tRNA-(ms(2)io(6)a)-hydroxylase; Identified by sequence similarity; putative; High confidence in function and specificity.
  
     0.414
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.