STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1555Hypothetical protein. (96 aa)    
Predicted Functional Partners:
ABO_1557
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.941
ABO_1556
Membrane protein, putative; Identified by match to PFAM protein family HMMPF03977; Function unclear.
  
    0.798
ABO_1554
(MATE efflux family protein, putative) identified by match to PFAM protein family HMMPF01554 InterPro: Uncharacterized domain UPF0013; Family membership.
       0.519
ABO_1104
Outer membrane siderophore receptor putative identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; Function unclear.
  
    0.420
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.