STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1556Membrane protein, putative; Identified by match to PFAM protein family HMMPF03977; Function unclear. (540 aa)    
Predicted Functional Partners:
ABO_1557
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.813
ABO_1555
Hypothetical protein.
  
    0.801
fpvA
Ferripyoverdine receptor precursor; Identified by sequence similarity; putative Interpro:; Family membership.
 
  
 0.735
fpvB
Ferripyoverdine receptor precursor; Identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; Family membership.
 
  
 0.730
fhuE
Outer membrane ferric siderophore receptor identified by sequencesimilarity; putative InterPro: TonB-dependent receptor protein; High confidence in function and specificity.
 
  
 0.679
ABO_1692
Uncharacterized protein conserved in bacteria (COG 3295).
 
  
 0.570
ABO_1694
Conserved hypothetical protein.
 
    0.564
ABO_1554
(MATE efflux family protein, putative) identified by match to PFAM protein family HMMPF01554 InterPro: Uncharacterized domain UPF0013; Family membership.
       0.519
foxA
(ferrioxamine receptor putative) identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; High confidence in function and specificity.
 
  
 0.482
ABO_0073
Conserved hypothetical protein; Region start changed from 77784 to 77655 (-129 bases) regional start was changed to be in accordance with the results of the observations.
  
     0.481
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.