Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABO_1572Conserved hypothetical protein; Identified by sequencesimilarity; putative. (289 aa)    
Predicted Functional Partners:
ABO_1571
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF00308; Belongs to the DnaA family. HdA subfamily.
       0.825
ABO_1575
Conserved hypothetical protein.
 
    0.655
ABO_0360
Conserved hypothetical protein.
  
     0.633
ABO_1576
Conserved hypothetical protein.
 
    0.623
gspM
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.593
perM
Permease PerM putative identified by sequence similarity; putative InterPro: Domain of unknown function DUF20; Specificity unclear.
 
     0.540
ABO_0432
Conserved hypothetical protein.
  
     0.521
ABO_1006
Conserved hypothetical protein.
  
     0.515
ABO_2491
Hypothetical protein.
  
     0.489
ABO_1221
Membrane-bound lytic murein transglycosylase D; Identified by match to PFAM protein family HMMPF01464 InterPro: SLT domain; High confidence in function and specificity.
  
     0.459
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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