STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1615Hypothetical protein (conserved hypothetical protein) identified by sequencesimilarity; putative. (176 aa)    
Predicted Functional Partners:
algS
Sigma factor algU negative regulatory protein AlgS; Identified by match to PFAM protein family HMMPF03872 RseA_N; High confidence in function and specificity.
  
    0.763
ABO_1782
Siderophore biosynthesis protein (transferase for other substituted phosphate groups) putative identified by sequence similarity; putative; Function unclear; Belongs to the P-Pant transferase superfamily.
  
     0.698
ABO_2087
Siderophore biosynthesis protein putative identified by sequence similarity; putative InterPro: Holo-acyl carrier protein synthase; conserved hypothetical protein; Belongs to the P-Pant transferase superfamily.
  
     0.653
ABO_0488
Conserved hypothetical protein; Probably phosphorylates lipids; the in vivo substrate is unknown.
  
     0.467
ABO_0979
Conserved hypothetical protein.
  
     0.460
nudJ
MutT/NUDIX family protein; Region start changed from 1451926 to 1451869 (-57 bases); Belongs to the Nudix hydrolase family. NudJ subfamily.
  
     0.445
rnfD
Electron transport complex protein rnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
       0.408
rnfG
Electron complex protein rnfG, putative; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
       0.408
rnfE
Electron transport complex protein rnfE, putative; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
       0.408
ftsl
Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.401
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.