STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
algSSigma factor algU negative regulatory protein AlgS; Identified by match to PFAM protein family HMMPF03872 RseA_N; High confidence in function and specificity. (194 aa)    
Predicted Functional Partners:
algN
Negative regulator for alginate biosynthesis; (sigma factor algU regulatory protein AlgN) identified by match to PFAM protein family HMMPF03888; High confidence in function and specificity.
 
 
 0.998
algU
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; (RNA polymerase sigma-H factor AlgT) identified by sequence similarity; putative InterPro: Sigma factor ECF subfamily; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.987
algW
Alginate biosynthesis negative regulator serine protease AlgW, identified by sequence similarity; putative InterPro: Serine proteases trypsin family; High confidence in function and specificity; Belongs to the peptidase S1C family.
  
 
 0.939
rpoE
(rna polymerase sigma-e factor (sigma-24).) identified by sequence similarity; putative InterPro: Sigma factor ECF subfamily; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.935
algM
AlgM protein; Identified by sequence similarity; putative; High confidence in function and specificity.
  
  
 0.922
ABO_0815
Trypsin-like serine protease; Serine endopeptidase identified by sequence similarity; putative InterPro: Serine proteases trypsin family; Specificity unclear; Belongs to the peptidase S1C family.
  
 
 0.823
sspB
Stringent starvation protein B; Identified by sequence similarity; putative; High confidence in function and specificity.
    
 
 0.822
ABO_0565
Serine endopeptidases; (algW) (HtrA-like protease AlgW) identified by match to PFAM protein family HMMPF00595; Function unclear.
  
 
 0.809
ABO_1615
Hypothetical protein (conserved hypothetical protein) identified by sequencesimilarity; putative.
  
    0.763
ABO_0652
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.709
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.