Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_1673(ABC efflux transporter, permease protein, putative) identified by match to PFAM protein family HMMPF03824 InterPro: DUF214; Family membership. (424 aa)    
Predicted Functional Partners:
ABO_1674
(ABC transporter, ATP-binding protein, putative) identified by sequencesimilarity; putative InterPro: AAA ATPase superfamily; Family membership.
 
 
 0.983
ABO_1672
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.955
ABO_1675
Hypothetical protein.
 
     0.950
ABO_1676
Hypothetical protein.
       0.773
macB
ABC transporter, ATP-binding protein/permease, putative; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.754
ABO_1677
Transcriptional regulator, Fur family; Identified by sequencesimilarity; putative InterPro: Ferric uptake regulator family; Family membership; Belongs to the Fur family.
       0.714
cobW
(CobW/P47K family protein, putative) identified by sequencesimilarity; putative InterPro: Cobalamin synthesis protein/P47K; Family membership.
       0.705
ABO_1678
Conserved hypothetical protein.
       0.700
dksA1
(DnaK suppressor protein homolog; C4-type zinc finger protein DksA/TraR family) identified by match to PFAM protein family HMMPF01258; Family membership.
  
    0.697
lolD
Lipoprotein releasing system ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.654
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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