STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1674(ABC transporter, ATP-binding protein, putative) identified by sequencesimilarity; putative InterPro: AAA ATPase superfamily; Family membership. (235 aa)    
Predicted Functional Partners:
ABO_1673
(ABC efflux transporter, permease protein, putative) identified by match to PFAM protein family HMMPF03824 InterPro: DUF214; Family membership.
 
 
 0.983
ABO_1672
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.957
ABO_1675
Hypothetical protein.
 
  
 0.919
ABO_1049
Lipoprotein releasing system, transmembrane protein, LolC/E family; Lipoprotein releasing system permease protein) identified by sequence similarity; putative transport lipids targeted to the outer membrane across the inner membrane; conserved hypothetical protein.
  
 
 0.859
lolA
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.796
ABO_1676
Hypothetical protein.
       0.773
dksA1
(DnaK suppressor protein homolog; C4-type zinc finger protein DksA/TraR family) identified by match to PFAM protein family HMMPF01258; Family membership.
  
  
 0.727
ABO_1678
Conserved hypothetical protein.
  
    0.722
cobW
(CobW/P47K family protein, putative) identified by sequencesimilarity; putative InterPro: Cobalamin synthesis protein/P47K; Family membership.
  
  
 0.713
ABO_1677
Transcriptional regulator, Fur family; Identified by sequencesimilarity; putative InterPro: Ferric uptake regulator family; Family membership; Belongs to the Fur family.
  
  
 0.706
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.