Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1675Hypothetical protein. (184 aa)    
Predicted Functional Partners:
ABO_1672
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.970
ABO_1673
(ABC efflux transporter, permease protein, putative) identified by match to PFAM protein family HMMPF03824 InterPro: DUF214; Family membership.
 
     0.950
ABO_1674
(ABC transporter, ATP-binding protein, putative) identified by sequencesimilarity; putative InterPro: AAA ATPase superfamily; Family membership.
 
  
 0.919
ABO_1677
Transcriptional regulator, Fur family; Identified by sequencesimilarity; putative InterPro: Ferric uptake regulator family; Family membership; Belongs to the Fur family.
  
  
 0.829
ABO_1676
Hypothetical protein.
       0.787
dksA1
(DnaK suppressor protein homolog; C4-type zinc finger protein DksA/TraR family) identified by match to PFAM protein family HMMPF01258; Family membership.
  
  
 0.763
ABO_1678
Conserved hypothetical protein.
  
    0.761
cobW
(CobW/P47K family protein, putative) identified by sequencesimilarity; putative InterPro: Cobalamin synthesis protein/P47K; Family membership.
  
  
 0.741
znuC
Zinc transport protein, ATPase; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
  
 0.698
macB
ABC transporter, ATP-binding protein/permease, putative; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
  
 0.563
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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