Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1692Uncharacterized protein conserved in bacteria (COG 3295). (201 aa)    
Predicted Functional Partners:
ABO_1693
Conserved hypothetical protein.
   
 0.994
ABO_1694
Conserved hypothetical protein.
 
   
 0.938
apbE
Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
     0.661
pfeA
Outer membrane ferric enterobactin receptor; Identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; High confidence in function and specificity.
 
     0.611
ABO_1556
Membrane protein, putative; Identified by match to PFAM protein family HMMPF03977; Function unclear.
 
  
 0.570
pfeS
(sensor histidine kinase) identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; High confidence in function and specificity.
       0.530
pfeR
DNA-binding response regulator; Identified by match to PFAM protein family HMMPF00072; Specificity unclear.
       0.530
ABO_1688
TonB-dependent siderophore receptor; Function unclear.
 
   
 0.522
ABO_2138
TonB-dependent receptor; Identified by match to PFAM protein family HMMPF00593; Specificity unclear.
  
   
 0.495
fpvB
Ferripyoverdine receptor precursor; Identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; Family membership.
 
  
 0.414
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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