STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1694Conserved hypothetical protein. (270 aa)    
Predicted Functional Partners:
ABO_1693
Conserved hypothetical protein.
 
  
 0.972
ABO_1692
Uncharacterized protein conserved in bacteria (COG 3295).
 
   
 0.937
apbE
Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
    0.729
pfeA
Outer membrane ferric enterobactin receptor; Identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; High confidence in function and specificity.
 
     0.672
ABO_2597
(iron ABC transporter periplasmic iron-bindingprotein putative) identified by sequence similarity; putative InterPro: Bacterial extracellular solute-binding protein family 1; Family membership.
   
    0.600
ABO_1556
Membrane protein, putative; Identified by match to PFAM protein family HMMPF03977; Function unclear.
 
    0.572
ABO_1688
TonB-dependent siderophore receptor; Function unclear.
 
    0.545
apbE-2
Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
    0.542
ABO_0239
Uncharacterized iron-regulated protein; Function unclear.
   
    0.493
ABO_2351
(universal stress protein family) identified by match to PFAM protein family HMMPF00582.
   
    0.493
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.