STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABO_1708Sensor histidine kinase; Identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Specificity unclear. (456 aa)    
Predicted Functional Partners:
ABO_1709
DNA-binding response regulator) identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Function unclear.
 
 0.968
ABO_1710
Conserved hypothetical protein.
 
   
 0.946
ABO_1711
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.814
phoP
DNA-binding heavy metal response regulator, putative; Identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Specificity unclear.
 
 0.800
ABO_1707
Hydrolase alpha/beta fold family identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Specificity unclear.
   
   0.629
ygiX
Transcriptional regulatory protein qseb; Probable 2-component transcription regulator identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; High confidence in function and specificity.
 
 
 0.609
colR
(DNA-binding heavy metal response regulator, putative) identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Specificity unclear.
 
 
 0.584
ABO_2001
(Transcriptional regulatory protein, putative) identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Family membership.
 
 
 0.572
ABO_1307
Sensor histidine kinase/respose regulator, contains HisKA, HATPase_c and two Response_reg receiver domains; identified by sequencesimilarity; putative InterPro: Histidine kinase C-terminal; Family membership.
  
 
 0.568
pfeS
(sensor histidine kinase) identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; High confidence in function and specificity.
  
   
 0.550
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.