STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1709DNA-binding response regulator) identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Function unclear. (222 aa)    
Predicted Functional Partners:
ABO_1708
Sensor histidine kinase; Identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Specificity unclear.
 
 0.968
ABO_1710
Conserved hypothetical protein.
 
    0.882
pfeS
(sensor histidine kinase) identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; High confidence in function and specificity.
 
 
 0.839
ABO_2000
Sensor histidine kinase; Identified by match to PFAM protein family HMMPF00512 InterPro: Histidine kinase C-terminal; Family membership.
 
 0.815
ABO_0030
Sensor histidine kinase identified by sequence similarity; putative InterPro: Histidine kinase C-terminal; High confidence in function and specificity.
 
 
 0.807
phoQ
PhoQ protein; Identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Family membership.
 
 0.802
ABO_1711
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.779
phoR
Phosphate regulon sensor protein PhoR; (sensory box histidine kinase PhoR) identified by sequence similarity; putative InterPro: Histidine kinase C-terminal; High confidence in function and specificity.
 
 0.777
colS
ColS protein; Identified by sequencesimilarity; putative; High confidence in function and specificity.
 
 
 0.772
ABO_2517
Two-component sensor protein; Identified by sequencesimilarity; putative InterPro: Histidine kinase C-terminal; Family membership.
 
 
 0.767
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.