STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1715Transcriptional regulator AraC family identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; Family membership. (337 aa)    
Predicted Functional Partners:
ABO_1716
Conserved hypothetical protein.
 
     0.577
ABO_2562
Conserved hypothetical protein; Predicted metal-dependent hydrolase.
  
     0.477
ABO_1717
Flavodoxin reductases (ferredoxin-NADPH reductase)putative; (oxidoreductase FAD-binding putative) identified by sequencesimilarity; putative InterPro: Oxidoreductase FAD and NAD(P)-binding domain; Family membership.
     
 0.476
ABO_0181
Conserved hypothetical protein; Predicted metal-dependent hydrolase.
  
     0.474
ABO_0143
Conserved hypothetical protein; Predicted metal-dependent hydrolase; identified by match to PFAM protein family HMMPF00892.
  
     0.465
ABO_0961
Conserved hypothetical protein; Predicted metal-dependent hydrolase.
  
     0.460
ABO_0188
Predicted metal-dependent hydrolase; conserved hypothetical protein.
  
     0.445
ABO_1718
Transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Family membership.
 
     0.442
ABO_1996
Hypothetical protein.
  
     0.432
ABO_0197
Metal-dependent hydrolase, putative; Predicted metal-dependent hydrolase; conserved hypothetical protein.
  
     0.425
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.