STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1722ABC transporter ATP-binding protein; Identified by match to TIGR protein family HMMTIGR00972 InterPro: AAA ATPase superfamily possibly phosphate transporter; Family membership. (225 aa)    
Predicted Functional Partners:
ABO_1721
Phosphate ABC transporter periplasmicphosphate-binding protein putative identified by sequence similarity; putative; Function unclear.
 
 
 0.997
ABO_1723
Conserved hypothetical protein.
 
 
 0.992
selU
Conserved hypothetical protein; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.
 
     0.780
ABO_1725
Conserved hypothetical protein; (selenide water dikinase) identified by match to PFAM protein family HMMPF02769 InterPro: AIR synthase related protein.
 
     0.754
ABO_1724
(phenazine biosynthesis-like protein, putative) identified by match to PFAM protein family HMMPF02567 InterPro: Phenazine biosynthesis PhzC/PhzF protein; Family membership.
     
 0.636
ABO_1726
Conserved hypothetical protein.
       0.553
ABO_1727
Conserved hypothetical protein.
       0.525
ABO_1654
Hypothetical protein.
  
     0.490
rpsI
30S ribosomal protein S9; Identified by sequence similarity; putative InterPro: Ribosomal protein S9; High confidence in function and specificity; Belongs to the universal ribosomal protein uS9 family.
  
     0.432
ksgA
Ribosomal RNA adenine dimethylase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
     0.405
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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