STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1734Conserved hypothetical protein. (200 aa)    
Predicted Functional Partners:
cheW
(chemotaxis protein, putative), pfam01584, CheW, CheW-like domain; conserved hypothetical protein.
  
    0.562
pilI
Type IV pili signal transduction protein PilI; Identified by match to PFAM protein family HMMPF01584 InterPro: CheW-like domain; High confidence in function and specificity.
  
    0.562
csuC
Type 1 pili usher pathway chaperone CsuC; Identified by match to PFAM protein family HMMPF00345; Specificity unclear.
  
     0.471
ABO_1842
Transcriptional regulator MarR family identified by match to PFAM protein family HMMPF03551 InterPro: Bacterial regulatory protein MarR family; Family membership.
  
     0.457
cheB
(protein-glutamate methylesterase CheB) identified by sequencesimilarity; putative InterPro: CheB methylesterase; High confidence in function and specificity.
  
    0.431
cheB-2
Protein-glutamate methylesterase; Identified by sequencesimilarity; putative InterPro: CheB methylesterase; High confidence in function and specificity.
  
    0.431
ABO_0699
Conserved hypothetical protein.
  
     0.423
csuD
Type 1 pili usher protein CsuD; Identified by sequence similarity; putative InterPro: Fimbrial biogenesis outer membrane usher protein; Function unclear.
  
     0.421
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.