STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1762Hypothetical protein; Identified by sequence similarity. (776 aa)    
Predicted Functional Partners:
dctQ
(TRAP-type C4-dicarboxylate transport system, small permease component) identified by sequence similarity; putative TMHMM reporting 4 transmembrane helices; High confidence in function and specificity.
 
 
 0.672
ABO_0979
Conserved hypothetical protein.
  
     0.609
dctQ-2
TRAP-type C4-dicarboxylate transport system, small permease component. identified by sequence similarity. Pfam:Tripartite ATP-independent periplasmic transporters,DctQ component TMHMM: reporting 5 transmembrane helices; High confidence in function and specificity.
 
 
 0.595
ABO_0782
Transcriptional regulator, GntR family; Identified by match to PFAM protein family HMMPF00392 InterPro: Bacterial regulatory proteins GntR family; Family membership.
 
    0.521
ABO_1854
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.519
ABO_0961
Conserved hypothetical protein; Predicted metal-dependent hydrolase.
  
     0.487
phaC1
Polyhydroxyalkanoate synthase; Alpha/beta hydrolase fold, PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; High confidence in function and specificity.
  
     0.487
ABO_2562
Conserved hypothetical protein; Predicted metal-dependent hydrolase.
  
     0.480
ABO_1733
Hypothetical protein.
  
     0.478
dctP
(TRAP dicarboxylate transporter DctP subunit) identified by sequencesimilarity; putative; Family membership.
 
  
 0.477
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.