Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_1767Conserved hypothetical protein; Identified by Glimmer2; putative. (105 aa)    
Predicted Functional Partners:
rnd
Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.
 
     0.939
ABO_1766
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0260 family.
       0.826
ABO_1765
Conserved hypothetical protein.
       0.684
hit-1
HIT family protein; Identified by match to PFAM protein family HMMPF01230, putative InterPro: HIT (Histidine triad protein) family; Family membership.
  
    0.656
hflD
Conserved hypothetical protein; Identified by sequence similarity.
  
  
 0.635
hemY
hemY protein; Identified by sequence similarity; putative InterPro: TPR repeat; Hypothetical protein.
  
     0.606
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
     0.548
ABO_0657
(decarboxylase family protein) identified by sequencesimilarity; putative; Family membership.
  
     0.534
ABO_2497
Conserved hypothetical protein.
  
   
 0.530
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
  
     0.520
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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