STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1778Conserved hypothetical protein. (214 aa)    
Predicted Functional Partners:
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.733
ABO_1779
Conserved hypothetical protein.
       0.700
tuf-1
Elongation factor (EF); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.503
tuf
Elongation factor (EF) identified by sequencesimilarity; putative InterPro: Translation elongation factor Tu; Specificity unclear.
   
   0.503
ABO_1777
Heat-shock protein IbpA; (ibpA) identified by sequencesimilarity; putative InterPro: Heat shock hsp20 (alpha crystallin) proteins family; Specificity unclear; Belongs to the small heat shock protein (HSP20) family.
       0.445
yhcX
Hypothetical protein yhcX; Identified by sequence similarity; putative InterPro: Carbon-nitrogen hydrolase; Family membership.
  
     0.433
ABO_1272
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.428
ABO_0970
D-amino acid oxidase family protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.
  
     0.415
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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