STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1782Siderophore biosynthesis protein (transferase for other substituted phosphate groups) putative identified by sequence similarity; putative; Function unclear; Belongs to the P-Pant transferase superfamily. (253 aa)    
Predicted Functional Partners:
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
 
 0.998
ABO_2087
Siderophore biosynthesis protein putative identified by sequence similarity; putative InterPro: Holo-acyl carrier protein synthase; conserved hypothetical protein; Belongs to the P-Pant transferase superfamily.
  
  
 
0.919
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by sequencesimilarity; putative InterPro: Acyl transferase domain; High confidence in function and specificity.
     
  0.900
ABO_2092
(peptide synthetase, putative); identified by sequence similarity; putative; High confidence in function and specificity.
 
  
 0.839
ABO_1783
(glycosyl transferase, putative) identified by sequencesimilarity; putative; Family membership.
  
  
 0.797
ABO_1615
Hypothetical protein (conserved hypothetical protein) identified by sequencesimilarity; putative.
  
     0.698
pgsA
(CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase) identified by sequencesimilarity; putative InterPro: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; High confidence in function and specificity; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
      
 0.540
ABO_2093
Peptide synthetase, putative; (peptide synthetase); identified by sequence similarity; putative; High confidence in function and specificity.
 
  
 0.528
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
      
 0.513
yojI
Pyoverdine ABC export systempermease/ATP-binding protein identified by sequence similarity; putative InterPro: ABC transporter transmembrane region; Family membership.
 
   
 0.496
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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