STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1789Conserved hypothetical protein. (344 aa)    
Predicted Functional Partners:
ABO_1790
Hypothetical protein.
       0.838
ABO_1788
None.
       0.826
lipH
Lipase foldase; Identified by sequence similarity; putative; High confidence in function and specificity.
  
     0.595
phaD
phaD, transcriptional regulator TetR family InterPro: Bacterial regulatory proteins TetR family; High confidence in function and specificity.
  
   
 0.557
lip
Lipase; Identified by sequencesimilarity; putative InterPro: Esterase/lipase/thioesterase family active site; High confidence in function and specificity.
  
    0.538
ABO_2467
Conserved hypothetical protein.
  
     0.526
ABO_1472
Conserved hypothetical protein, probable MFS metabolite transporter, hypothetical transport protein ywbf; Family membership.
 
 
 0.454
ABO_0085
GMC oxidoreductase family protein, putative; Identified by sequence similarity; identified by match to PFAM protein family HMMPF00732; putative InterPro: Glucose-methanol-choline (GMC) oxidoreductase; Family membership.
  
     0.438
ABO_2145
(conserved hypothetical protein) identified by sequence similarity; putative InterPro: TPR repeat.
  
     0.430
ABO_1417
Conserved hypothetical protein; Uncharacterized protein, possibly involved in aromatic compounds catabolism (translation initiation factor, probable) identified by match to TIGR protein family HMMTIGR00369.
  
     0.412
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.