STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABO_1825DNA helicase-related protein; Identifiedby sequence similarity; putative; Specificity unclear. (1757 aa)    
Predicted Functional Partners:
hsdM
Identified by sequencesimilarity; putative InterPro: Type I restriction-modification system M subunit; High confidence in function and specificity.
 
  
 0.756
hsdR
Type I restriction-modification system, R subunit; Identified by sequencesimilarity; putative InterPro: DEAD/DEAH box helicase; High confidence in function and specificity.
 
    0.709
ABO_1826
Conserved hypothetical protein.
       0.686
ABO_1827
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF04174.
       0.606
hsdS
(type I restriction-modification system Ssubunit) identified by sequence similarity; putative InterPro: Restriction modification system type I; High confidence in function and specificity.
 
    0.593
rmuC
Conserved hypothetical protein; (DNA recombination protein, RmuC homolog) identified by match to PFAM protein family HMMPF02646 InterPro: DUF195.
 
     0.529
ABO_0917
Identified by sequencesimilarity; putative InterPro: Domain of unknown function DUF33; Family membership.
  
    0.441
ABO_0677
Identified by sequencesimilarity; putative InterPro: Domain of unknown function DUF33; Family membership.
  
    0.435
ABO_1828
Hypothetical protein.
  
    0.416
nnrD
Conserved hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair o [...]
  
    0.400
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.