STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsdS(type I restriction-modification system Ssubunit) identified by sequence similarity; putative InterPro: Restriction modification system type I; High confidence in function and specificity. (391 aa)    
Predicted Functional Partners:
hsdM
Identified by sequencesimilarity; putative InterPro: Type I restriction-modification system M subunit; High confidence in function and specificity.
 
 
 0.999
hsdR
Type I restriction-modification system, R subunit; Identified by sequencesimilarity; putative InterPro: DEAD/DEAH box helicase; High confidence in function and specificity.
 
 
 0.976
ABO_1828
Hypothetical protein.
 
     0.779
rmuC
Conserved hypothetical protein; (DNA recombination protein, RmuC homolog) identified by match to PFAM protein family HMMPF02646 InterPro: DUF195.
       0.776
ABO_1825
DNA helicase-related protein; Identifiedby sequence similarity; putative; Specificity unclear.
 
    0.591
ABO_1827
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF04174.
       0.471
atpF
ATP synthase F0, B subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
    
 
 0.444
ABO_1826
Conserved hypothetical protein.
       0.426
ABO_1834
Conserved hypothetical protein; Predicted transcriptional regulator.
 
     0.411
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.410
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.