STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hsdMIdentified by sequencesimilarity; putative InterPro: Type I restriction-modification system M subunit; High confidence in function and specificity. (533 aa)    
Predicted Functional Partners:
hsdS
(type I restriction-modification system Ssubunit) identified by sequence similarity; putative InterPro: Restriction modification system type I; High confidence in function and specificity.
 
 
 0.999
hsdR
Type I restriction-modification system, R subunit; Identified by sequencesimilarity; putative InterPro: DEAD/DEAH box helicase; High confidence in function and specificity.
 
 
 0.990
ABO_1828
Hypothetical protein.
 
     0.783
rmuC
Conserved hypothetical protein; (DNA recombination protein, RmuC homolog) identified by match to PFAM protein family HMMPF02646 InterPro: DUF195.
       0.773
ABO_1825
DNA helicase-related protein; Identifiedby sequence similarity; putative; Specificity unclear.
 
  
 0.756
ABO_1827
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF04174.
   
   0.499
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
 
 0.486
ABO_1826
Conserved hypothetical protein.
   
   0.456
ABO_1834
Conserved hypothetical protein; Predicted transcriptional regulator.
     
 0.408
ABO_0912
(acetyltransferase, putative) identified by sequence similarity; putative; Family membership.
  
    0.401
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.