STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1835Transcriptional regulator, putative; (conserved hypothetical protein) identified by match to PFAM protein family HMMPF00376 InterPro: Bacterial regulatory proteins MerR family. (119 aa)    
Predicted Functional Partners:
ihfA
Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
 
  
 0.962
pheT
Phenylalanyl-tRNA synthetase, beta subunit; Identified by sequence similarity; putative; High confidence in function and specificity; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.786
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
    0.757
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
    0.740
pheS
Phenylalanyl-tRNA synthetase, alpha subunit; Identified by match to TIGR protein family HMMTIGR00468 InterPro: Phenylalanyl-tRNA synthetase alpha subunit; High confidence in function and specificity; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
     
 0.668
ABO_2602
Hypothetical protein.
  
    0.519
cheW
(chemotaxis protein, putative), pfam01584, CheW, CheW-like domain; conserved hypothetical protein.
  
 
 
 0.514
tonB
TonB; Periplasmic protein TonB, links inner and outer membranes; Family membership.
  
     0.492
ABO_2333
Conserved hypothetical protein; Identified by sequence similarity; putative.
  
     0.487
rpmI
50S ribosomal protein L35; Identified by match to PFAM protein family HMMPF01632 InterPro: Ribosomal protein L35; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL35 family.
  
    0.465
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.