Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABO_1842Transcriptional regulator MarR family identified by match to PFAM protein family HMMPF03551 InterPro: Bacterial regulatory protein MarR family; Family membership. (148 aa)    
Predicted Functional Partners:
ABO_1843
Monooxygenase, putative,; Specificity unclear.
 
   
 0.757
ABO_1844
Conserved hypothetical protein; (major facilitator family transporter) identified by match to PFAM protein family HMMPF03977.
     
 0.608
ABO_1734
Conserved hypothetical protein.
  
     0.457
rpmI
50S ribosomal protein L35; Identified by match to PFAM protein family HMMPF01632 InterPro: Ribosomal protein L35; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL35 family.
 
    0.408
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
 
  
 0.405
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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