STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1848(ABC transporter, ATP-binding protein/permease protein, putative) identified by match to PFAM protein family HMMPF03772 InterPro: AAA ATPase superfamily; Family membership. (927 aa)    
Predicted Functional Partners:
ABO_1849
(HlyD family secretion protein) identified by match to TIGR protein family HMMTIGR01730 InterPro: HlyD family secretion protein Gram-negative bacteria produce a number of proteins which are secreted into the growth medium by a mechanism that does not require a cleaved N-terminal signal sequence. These proteins, while having different functions, require the help of two or more proteins for their secretion across the cell envelope. These secretion proteins include members belonging to the ABC transporter family (see the relevant entry IPR003439) and a protein belonging to a family which [...]
  
 0.972
ABO_1847
(ABC transporter, ATP-binding protein, permease protein, putative) identified by match to TIGR protein family HMMTIGR01291; Family membership.
 
  
0.893
ABO_0063
Conserved hypothetical protein.
  
  
 0.723
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
  
  
 0.656
ABO_1084
Serine (threonine) protein kinase; (pnk) identified by sequencesimilarity; putative InterPro: Serine/Threonine protein kinase; High confidence in function and specificity.
  
 
 0.637
msbA
ATP-binding cassette (ABC) LPS transporter,permease; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 0.606
guaA-2
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
     
 0.515
ABO_0438
Oxidoreductase; Nitrobenzoate reductase putative identified by sequencesimilarity; putative InterPro: Nitroreductase family; High confidence in function and specificity.
  
  
 0.503
ABO_0884
Nitroreductase family protein identified by match to PFAM protein family HMMPF00881 InterPro: Nitroreductase family; Family membership.
  
  
 0.503
pnb
Nitrobenzoate reductase, putative; Identified by sequencesimilarity; putative InterPro: Nitroreductase family; Family membership.
  
  
 0.503
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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