STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1853(sensor histidine kinase/response regulator, putative) identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Family membership. (646 aa)    
Predicted Functional Partners:
ABO_1307
Sensor histidine kinase/respose regulator, contains HisKA, HATPase_c and two Response_reg receiver domains; identified by sequencesimilarity; putative InterPro: Histidine kinase C-terminal; Family membership.
 
 
0.962
ABO_1311
Sensory box protein/response regulator identified by sequencesimilarity; putative; Function unclear.
 
0.952
ABO_2155
(two-component protein: Na-solute symporter/sensory box histidinekinase/response regulator putative) identified by match to PFAM protein family HMMPF02518 and HMMPF00072; putative InterPro: Sodium:solute symporter family TMHMM: reportin 12 transmembrane helices; Family membership.
  
 
 0.949
cheR-2
(chemotaxis protein methyltransferase CheR-like) identified by sequence similarity; putative InterPro: CheR-type MCP methyl-transferase; High confidence in function and specificity.
  
 0.938
ABO_1309
Sensory box protein/response regulator; Identified by sequencesimilarity; putative InterPro: Response regulator receiver domain; High confidence in function and specificity.
 
0.938
ABO_2520
Sensor histidin kinase, contains PAS-fold, HisKA and HATPase_c domains; conserved hypothetical protein.
 
0.937
chpA
ChpA two-component hybrid sensor and regulator, putative identified by match to TIGR protein family HMMTIGR01387 InterPro: Histidine kinase C-terminal still frameshift probable component of chemotactic signal transduction system; Specificity unclear.
  
 
 0.930
ABO_1811
Two-component hybrid sensor and regulator; Identified by sequencesimilarity; putative InterPro: Hpt domain The N-terminal third of this protein harbours a hpt domain.Similarity to rpfC proteins does only rely on this domain. Usually, rpfC proteins are composed of a histidine kinase domain at the N-terminus, a response regulatory domain in the central part and an hpt domain at the C-terminus; Family membership.
  
 0.926
gacS
Sensor/response regulator hybrid; (sensor histidine kinase/response regulator GacS) identified by sequence similarity; putative InterPro: Histidine kinase C-terminal; Family membership.
 
 
0.925
ABO_2666
GAF/PAS/GGDEF domain protein; Identified by sequencesimilarity; putative InterPro: Domain of unknown function DUF9; Family membership.
 
 0.924
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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